{"_self":{"principle":"Self-explaining payload — no external context required. This _self block describes what you are reading and where to look next.","widget":"article_bundle","feature":"bundle","name":"LLM article bundle","what":"Portable reference package: body + claims + sources + voxels + provenance + manifest + constitution.","contains":"body, claims, sources, voxels, provenance, question graph, constitution, llm_manifest","slug":"semaglutide-gut","urls":{"read":"https://miscsubjects.com/api/articles/semaglutide-gut/bundle?format=markdown"},"how_to_use":"Reference bundle for an LLM or reader. §SELF explains the surface; ingest and claim endpoints in llm_manifest are the write-back routes.","write":null,"imessage":null,"router_tag":null,"proof_chain":[{"step":1,"claim":"Articles are voxel graphs of tiered claims, not prose blobs.","verify":"https://miscsubjects.com/api/articles/constitution"},{"step":2,"claim":"Claims link to hash-chained sources via source_ids.","verify":"https://miscsubjects.com/api/articles/semaglutide-gut/sources"},{"step":3,"claim":"Ask reads topology; ingest/claim append to ledger.","verify":"https://miscsubjects.com/api/protocol"},{"step":4,"claim":"Models queue growth: populate → collaborate → repair → reflex.","verify":"https://miscsubjects.com/api/protocol/grow"},{"step":5,"claim":"Graph proves its own shape (reflex) and $/claim (yield).","verify":"https://miscsubjects.com/graph.html?layer=reflex"},{"step":6,"claim":"Full feature index + _explain on every API response.","verify":"https://miscsubjects.com/api/articles/system-map"}],"related_features":[{"id":"topology","name":"Article topology","what":"Claims, sources, anecdotes, user reports, related embeds, question graph slice — for ask/ROUTER.","urls":{"read":"https://miscsubjects.com/api/articles/semaglutide-gut/topology"}},{"id":"voxels","name":"Voxel graph","what":"Claims as atoms, sources as edges (supported_by, posted_by). Per-claim provenance.","urls":{"read":"https://miscsubjects.com/api/articles/semaglutide-gut/voxels","write":"https://miscsubjects.com/api/protocol/claim"}},{"id":"ask","name":"Ask protocol","what":"Answer only from topology; creates question_node with gaps and ingest_hint.","urls":{"read":"https://miscsubjects.com/api/articles/semaglutide-gut/prompts","write":"https://miscsubjects.com/api/protocol/ask"}},{"id":"ingest","name":"Ingest protocol","what":"Parse pasted evidence → source ledger + claims + evidence_ingest node.","urls":{"write":"https://miscsubjects.com/api/protocol/ingest"}},{"id":"claim_post","name":"Claim post protocol","what":"Prompt-injection style POST — one claim voxel with who_claims + posted_by.","urls":{"read":"https://miscsubjects.com/api/articles/semaglutide-gut/voxels","write":"https://miscsubjects.com/api/protocol/claim"}},{"id":"llm_manifest","name":"LLM manifest","what":"Machine-readable read/write contract for external LLMs.","urls":{"read":"https://miscsubjects.com/api/articles/llm-manifest"}}],"system_map":"https://miscsubjects.com/api/articles/system-map","system_map_markdown":"https://miscsubjects.com/api/articles/system-map?format=markdown","not_medical_advice":true},"_explain":{"feature":"bundle","name":"LLM article bundle","what":"Portable reference package: body + claims + sources + voxels + provenance + manifest + constitution.","why":"Every feature is auditable collective intelligence","how":"Reference bundle for an LLM or reader. §SELF explains the surface; ingest and claim endpoints in llm_manifest are the write-back routes.","model":null,"verifies":null,"urls":{"read":"https://miscsubjects.com/api/articles/semaglutide-gut/bundle?format=markdown"},"imessage":null,"router":null,"related":[{"id":"topology","what":"Claims, sources, anecdotes, user reports, related embeds, question graph slice — for ask/ROUTER."},{"id":"voxels","what":"Claims as atoms, sources as edges (supported_by, posted_by). Per-claim provenance."},{"id":"ask","what":"Answer only from topology; creates question_node with gaps and ingest_hint."},{"id":"ingest","what":"Parse pasted evidence → source ledger + claims + evidence_ingest node."},{"id":"claim_post","what":"Prompt-injection style POST — one claim voxel with who_claims + posted_by."},{"id":"llm_manifest","what":"Machine-readable read/write contract for external LLMs."}],"not_medical_advice":true},"MASTHEAD":{"sorry_status":"planes not merged yet — sorry-status activates after voxel-merge-planes","identity":{"slug":"semaglutide-gut","version":2,"content_hash":"25f57ecb95eaaef5f753b03aa51cd869127f77f04eec6c92c204599fefb0c69f","thread_head":"genesis","divs":20},"thesis":{"root_claim":"c1","text":"A 2025 study in 15 Chinese T2DM patients found semaglutide altered gut microbiota diversity alongside weight and glycemic improvements.","tier":"human"},"load_bearing":[{"id":"c5","tier":"human","status":"active","text":"No large human trials confirm semaglutide reverses specific gut pathologies such as IBD or increased permeability."},{"id":"c2","tier":"preclinical","status":"active","text":"In high-fat diet mice, semaglutide increased Akkermansia muciniphila and improved gut barrier markers."},{"id":"c3","tier":"mechanistic","status":"active","text":"Semaglutide's primary functional gut effect is delayed gastric emptying via GLP-1 signaling."},{"id":"c4","tier":"anecdotal","status":"active","text":"Reddit users report both IBS symptom reduction and new gastroparesis-like issues with semaglutide."}],"standing_objections":{"open":0,"strongest_open":null,"link":"https://miscsubjects.com/api/articles/semaglutide-gut/discourse"},"verbs":{"read":"GET https://miscsubjects.com/api/articles/semaglutide-gut/voxels — DIVs + hashes + chains (free)","read_claims":"GET https://miscsubjects.com/api/articles/semaglutide-gut/claims — every formal claim as claim:<id> with current hash, thread, stable link, and exact contribution/edit bodies","challenge":"POST https://miscsubjects.com/api/protocol/voxel-challenge {slug, expected_thread_head, target_div?, expected_hash?, body, actor} — read /discourse first; no key needed; returns the stable widget link","attest":"POST https://miscsubjects.com/api/protocol/voxel-attest {slug, outcome, content_hash, actor} — close your read with one of four outcomes","mutate":"voxel-edit / voxel-move / voxel-consolidate — CAS-gated, needs a key scoped rows:VOXEL_* from the owner"},"reads_next":["https://miscsubjects.com/a/philosophy","https://miscsubjects.com/api/articles/semaglutide-gut/discourse","https://miscsubjects.com/api/protocol"]},"bundle_version":1,"generated_at":"2026-07-30T01:00:02.414Z","slug":"semaglutide-gut","title":"Semaglutide for Gut: Evidence on Microbiota, Barrier Function, and Motility","url":"https://miscsubjects.com/a/semaglutide-gut","register":"source_ledger","tags":["peptide","matrix"],"posted_at":"2026-06-29T21:33:11.159Z","updated_at":"2026-07-17T02:41:45.913Z","body":"## What's breaking down\n\nGut health involves layers of microbial balance, intestinal barrier integrity, motility control, and low-grade inflammation. When these layers degrade faster than they repair, issues like dysbiosis, increased permeability, slowed or erratic emptying, and systemic metabolic stress can persist. Weight excess adds another layer by altering bile acids, short-chain fatty acid production, and overall gut signaling. Semaglutide is discussed here in the context of these layers rather than symptom masking.\n\n## Why Semaglutide might help you\n\n1. **What keeps failing:** Weight-related metabolic stress on gut repair capacity; shifts in microbiota that favor inflammation over short-chain fatty acid production; delayed or disordered motility from GLP-1 signaling changes.\n2. **What Semaglutide is studied to do:** Studied for GLP-1-driven weight loss and direct receptor effects on gastric emptying, bile acid metabolism, and microbial composition shifts.\n3. **Therefore for you:** If metabolic load or microbiota imbalance forms part of your gut picture, Semaglutide is discussed because it targets those upstream repair pathways — not because it simply slows transit or suppresses appetite signals.\n\n## How these fit together\n\nSingle-compound focus. Semaglutide maps primarily to metabolic load and body weight layers. If your profile includes multi-peptide stacks, other compounds would target separate degeneration layers such as direct neural repair or inflammation suppression.\n\n## What the evidence actually shows\n\nHuman data remain limited. A 2025 study in 15 Chinese patients with type 2 diabetes on metformin found semaglutide altered gut microbiota diversity and community structure alongside glycemic and weight improvements (source from pubmed.ncbi.nlm.nih.gov/41132642). Another small trial in people with HIV (SLIM LIVER) examined microbiota changes but results are preliminary. A 2026 analysis concluded semaglutide and similar agents do not directly reshape the microbiome in detectable ways beyond weight loss effects (nature.com/articles/s41598-026-36318-3).\n\nPreclinical work is more abundant. In high-fat diet mice, semaglutide increased beneficial taxa such as Akkermansia muciniphila, improved gut barrier markers, reduced inflammatory cytokines, and altered Firmicutes-to-Bacteroidetes ratios (pubmed.ncbi.nlm.nih.gov/38402930; pubmed.ncbi.nlm.nih.gov/38583231). One mouse study linked these shifts to better cognitive outcomes and lower systemic inflammation via the microbiota-gut-brain axis (pmc.ncbi.nlm.nih.gov/articles/PMC11326427).\n\nMechanistic findings include delayed gastric emptying as the primary functional effect, with secondary influences on bile acids and intestinal motility. No large human trials confirm direct gut healing or reversal of specific pathologies like IBD or leaky gut.\n\n## What scientists say\n\nReviews note inconsistent microbiome findings across studies, often confounded by diet, concurrent metformin use, and weight loss itself. Animal data suggest GLP-1 agonists can enrich mucin-degrading bacteria and support barrier genes, yet human translation is described as investigational. Researchers emphasize that observed changes may stem more from caloric restriction than direct microbial action.\n\n## What people say on Reddit\n\nAnecdotes split sharply. Some users report reduced IBS symptoms or calmer digestion after starting semaglutide, with improvements tied to lower overall food intake. Others describe persistent nausea, constipation, sulfur burps, or new-onset gastroparesis-like symptoms that lingered months after stopping. Threads frequently mention slowed motility as both a therapeutic feature and a source of discomfort during dose escalation.\n\n## What people say on X\n\nPosts echo Reddit patterns: occasional notes of steadier blood sugar and less bloating, alongside frequent complaints of GI side effects and questions about long-term motility recovery. Discussions often reference emerging animal microbiome data but stress individual variability.\n\n## What we do not know\n\nLong-term human studies on semaglutide's net effect on gut barrier function or sustained microbiota shifts are absent. Causal links between observed microbial changes and clinical gut outcomes remain unproven. Whether benefits persist after discontinuation or interact with specific diets is unclear. Data on non-obese populations with primary gut disorders are scarce.\n\n## Safety and limits\n\nCommon gastrointestinal effects include nausea, vomiting, constipation, and diarrhea, especially during titration. Rare but reported risks involve delayed gastric emptying severe enough to mimic gastroparesis. Oral formulations using absorption enhancers have been linked in rat studies to microbiota shifts and inflammatory markers. All effects are context-dependent on dose, duration, and individual factors. This remains an area of ongoing research without established therapeutic claims for gut repair.","claims":[{"id":"c2","text":"In high-fat diet mice, semaglutide increased Akkermansia muciniphila and improved gut barrier markers.","tier":"preclinical","weight":0.5,"effective_weight":0.5,"slot":null,"source_ids":["s15","s21"],"who_claims":"grok/grok-4.3","status":"active"},{"id":"c1","text":"A 2025 study in 15 Chinese T2DM patients found semaglutide altered gut microbiota diversity alongside weight and glycemic improvements.","tier":"human","weight":0.8,"effective_weight":0.22,"slot":null,"quote_gated":true,"source_ids":["s8"],"who_claims":"grok/grok-4.3","status":"active"},{"id":"c5","text":"No large human trials confirm semaglutide reverses specific gut pathologies such as IBD or increased permeability.","tier":"human","weight":0.8,"effective_weight":0.22,"slot":null,"quote_gated":true,"source_ids":["s2"],"who_claims":"grok/grok-4.3","status":"active"},{"id":"c3","text":"Semaglutide's primary functional gut effect is delayed gastric emptying via GLP-1 signaling.","tier":"mechanistic","weight":0.3,"effective_weight":0.22,"slot":null,"quote_gated":true,"source_ids":["s2"],"who_claims":"grok/grok-4.3","status":"active"},{"id":"c4","text":"Reddit users report both IBS symptom reduction and new gastroparesis-like issues with semaglutide.","tier":"anecdotal","weight":0.3,"effective_weight":0.22,"slot":null,"quote_gated":true,"source_ids":["s25","s27"],"who_claims":"grok/grok-4.3","status":"active"}],"sources":[{"id":"s2","type":"other","url":"https://www.fellahealth.com/guide/does-semaglutide-help-heal-your-gut","title":"Does Semaglutide Help Heal Your Gut? Evidence and ...","summary":"Reviews functional vs reparative effects; notes lack of human healing data.","quote":"Semaglutide does not directly heal the gut or treat gastrointestinal pathology; its effects are primarily functional, involving delayed gastric emptying.","quote_status":"unverified","link_status":"ok","claim_ids":["c3","c5"],"hash":"1a0946bec84deb69"},{"id":"s8","type":"pubmed","url":"https://pubmed.ncbi.nlm.nih.gov/41132642/","title":"The Effect of Semaglutide on Gut Microbiota in Chinese Patients with T2DM","summary":"Human study showing microbiota shifts in T2DM patients.","quote":"semaglutide treatment not only improved glycemic control but also induced significant changes in gut microbial diversity and community structure","quote_status":"unverified","link_status":"ok","claim_ids":["c1"],"hash":"63a0c8b4aeb2bc8c"},{"id":"s15","type":"pubmed","url":"https://pubmed.ncbi.nlm.nih.gov/38402930/","title":"Semaglutide alleviates gut microbiota dysbiosis induced by high-fat diet in obese mice","summary":"Preclinical mouse study on dysbiosis reversal.","quote":"This study investigated the effects of semaglutide (Sema) on the gut microbiota of obese mice induced with high-fat diet (HFD).","quote_status":"verified","link_status":"ok","claim_ids":["c2"],"hash":"6ff8907b8974ca87"},{"id":"s21","type":"pubmed","url":"https://pubmed.ncbi.nlm.nih.gov/38583231/","title":"Semaglutide alters gut microbiota and improves NAFLD in db/db mice","summary":"Mouse data on barrier improvement and taxa changes.","quote":"semaglutide also improved the integrity of gut barrier and altered gut microbiota, especially Alloprevotella, Alistpes, Ligilactobacillus and Lactobacillus.","quote_status":"verified","link_status":"ok","claim_ids":["c2"],"hash":"f429ded97bc30ee2"},{"id":"s25","type":"reddit","url":"https://www.reddit.com/r/Semaglutide/comments/1bld5ac/stomach_problems_months_later/","title":"Stomach problems months later","summary":"User reports of ongoing GI issues.","quote":"I've had stomach pain since bad it gave me heart palpitations, diarrhea, burning pain in my upper stomach...","quote_status":"unverified","link_status":"ok","claim_ids":["c4"],"hash":"1b9a6e0560e284f8"},{"id":"s27","type":"reddit","url":"https://www.reddit.com/r/Semaglutide/comments/1rxhmjy/did_anyone_elses_ibsstomach_issues_disappear_on/","title":"Did anyone else's IBS/stomach issues disappear on semaglutide?","summary":"Mixed positive and side-effect anecdotes.","quote":"Has anyone else noticed their IBS or stomach issues improved on semaglutide?","quote_status":"unverified","link_status":"ok","claim_ids":["c4"],"hash":"3a8e8669422dbcb3"}],"voxels":{"slug":"semaglutide-gut","counts":{"divs":20,"voxels":5,"sources":6,"edges":12},"note":"slim bundle — full voxels at /api/articles/semaglutide-gut/voxels"},"constitution":{"url":"https://miscsubjects.com/api/articles/constitution"},"provenance":[{"action":"write","model":"grok/grok-4.3","ts":"2026-06-30T00:26:42.983Z","hash":"8c943bfd37a10721","tokens_in":14696,"tokens_out":3280},{"action":"voxel_divide","model":"owner","ts":"2026-07-17T02:41:45.913Z","hash":"09d1a6a122bc9c26","tokens_in":0,"tokens_out":0}],"contributions":[{"id":"k1","ts":"2026-06-30T00:26:42.983Z","model":"grok/grok-4.3","role":"writer","action":"redraft","rationale":"","hash":"32c9d35b62b97facf2aabb45edd3574d476de0baadbe918bb063118533dfa0cd"}],"topology":null,"slim":true,"ledger_totals":{"claims":5,"sources":6,"exported_claims":5,"exported_sources":6},"question_graph":{"slug":"semaglutide-gut","questions":[],"evidence":[],"edges":[],"counts":{"questions":0,"evidence":0,"edges":0}},"verification":{"provenance":{"valid":true,"entries":2,"head":"09d1a6a122bc9c26c8524053511bcafd6e6ab960af2bd6bfa2eed75bf0225e4a"},"sources":{"valid":true,"entries":6,"head":"3a8e8669422dbcb3f1c6a3416e85be5102db0901334fa59d310e8d207728d2f1"}},"counts":{"claims":5,"sources":6,"provenance":2,"contributions":1,"questions":0,"evidence_ingests":0,"voxel_edges":12},"transport":"Open every URL in this bundle with your browser or web / URL-fetch tool. Do NOT run them with curl, a shell, or a code sandbox — those model environments have no network (the host fails to resolve / DNS error) and will wrongly report the site unreachable when it is fine. Opening the link IS the call.","llm_manifest":{"version":"1","site":"https://miscsubjects.com","purpose":"Peptide evidence articles with hash-chained source ledgers, tiered claims, and a question graph. LLMs should READ bundles/URLs and WRITE back via ingest — never invent doses.","read":{"human_page":"https://miscsubjects.com/a/semaglutide-gut","bundle_json":"https://miscsubjects.com/api/articles/semaglutide-gut/bundle","bundle_markdown":"https://miscsubjects.com/api/articles/semaglutide-gut/bundle?format=markdown","topology":"https://miscsubjects.com/api/articles/semaglutide-gut/topology","question_graph":"https://miscsubjects.com/api/articles/semaglutide-gut/question-graph","sources":"https://miscsubjects.com/api/articles/semaglutide-gut/sources","provenance":"https://miscsubjects.com/api/articles/semaglutide-gut/provenance","contributions":"https://miscsubjects.com/api/articles/semaglutide-gut/contributions","graph_topology":"https://miscsubjects.com/api/articles/semaglutide-gut/graph-topology?question={question}","voxels":"https://miscsubjects.com/api/articles/semaglutide-gut/voxels","constitution":"https://miscsubjects.com/api/articles/constitution","ontology":"https://miscsubjects.com/api/articles/ontology","system_map":"https://miscsubjects.com/api/articles/system-map","system_map_markdown":"https://miscsubjects.com/api/articles/system-map?format=markdown","health":"https://miscsubjects.com/api/articles/semaglutide-gut/health","repair":"POST https://miscsubjects.com/api/protocol/repair","list_articles":"https://miscsubjects.com/api/articles","graph_canvas":"https://miscsubjects.com/graph.html?slugs=semaglutide-gut","graph_yield":"https://miscsubjects.com/api/graph?slugs=semaglutide-gut&layer=yield","obsidian_vault":"https://miscsubjects.com/api/articles/obsidian-vault?slugs=semaglutide-gut","graph_query":"https://miscsubjects.com/api/v1/query?from=semaglutide-gut&kind=claim&where=tier=human"},"ask":{"description":"Answer only from topology; creates a question_node with gaps.","api":"POST https://miscsubjects.com/api/protocol/ask","body":{"slug":"{slug}","question":"string"},"imessage":"semaglutide-gut|your question","router_tag":"[ARTICLE_ASK]semaglutide-gut|question[/ARTICLE_ASK]","auth":"x-terminal-key header for API; iMessage/WhatsApp via miscsubjects build"},"ingest":{"description":"Parse pasted evidence → source ledger + claims + evidence_ingest node.","api":"POST https://miscsubjects.com/api/protocol/ingest","body":{"slug":"{slug}","evidence":"paste text","question_node_id":"optional qn_..."},"imessage":"ingest semaglutide-gut|q:{node_id}|paste evidence","router_tag":"[ARTICLE_INGEST]semaglutide-gut|evidence[/ARTICLE_INGEST]","tiers":["human","preclinical","anecdotal","mechanistic","speculative"]},"claim":{"description":"Prompt-injection style POST — one claim voxel with who_claims + posted_by provenance.","api":"POST https://miscsubjects.com/api/protocol/claim","body":{"slug":"{slug}","text":"one assertion","tier":"human|preclinical|anecdotal|mechanistic|speculative","who_claims":"study author, platform, or model id","source_ids":"optional [s1]"},"imessage":"claim semaglutide-gut|tier|assertion — who claims it?","router_tag":"[ARTICLE_CLAIM]semaglutide-gut|tier|assertion[/ARTICLE_CLAIM]","slots":["what_it_is","who_claims_what","what_is_known","what_is_unknown","mechanism","limitations","disclaimer"]},"tiers":{"human":0.8,"preclinical":0.5,"anecdotal":0.3,"mechanistic":0.3,"speculative":0.1},"invariants":["Self-explaining — every API JSON has _self; every paste widget has §SELF; root index at /api/articles/system-map","Append-only — revisions preserved at ?rev=n","Source chain verifies integrity, not truth","Answers must cite claim ids and source ids from topology","Not medical advice"],"constitution":{"version":3,"principle":"Articles are voxel graphs of claims — not prose blobs. Every assertion is a claim atom with tier, weight, source_ids, and posted_by provenance.","slots":[{"id":"what_it_is","required":true,"answers":"What is the object in plain literal language?"},{"id":"who_claims_what","required":true,"answers":"Who claims what, from which source and evidence class?"},{"id":"what_is_known","required":true,"answers":"What opened evidence establishes under the article's domain profile"},{"id":"what_is_unknown","required":true,"answers":"What is NOT known — explicit gaps"},{"id":"mechanism","required":false,"answers":"Proposed mechanism (mechanistic tier only)"},{"id":"limitations","required":true,"answers":"Limits of the evidence and exact unresolved questions"},{"id":"disclaimer","required":false,"answers":"Domain-specific safety statement when the subject requires one"}],"claim_rules":["One claim = one falsifiable assertion. No compound claims.","Every claim must declare tier: human|preclinical|anecdotal|mechanistic|speculative|system.","system tier = architecture/design axioms (not biological mechanism). Use for protocol self-definition.","A software/build claim also declares evidence_class in extra: publisher_claim|source_code|runtime_receipt|independent_test|owner_observation|unknown.","Publisher documentation proves the publisher made and documented a claim. It is not independent runtime proof.","Source code proves an implementation exists. A successful receipt proves one invocation. Neither proves general reliability or field superiority.","Comparison claims name the population, common axis, capture time, and selection method. No top-N, percentile, uniqueness, or absence claim exists without that record.","Sourced claims must cite source_ids from the hash-chained ledger.","Unsourced claims must set source_status: unsourced and why_material.","posted_by is mandatory on every new claim (model id, human, or channel).","No medical advice, no doses, no 'you should take'.","Bad information is retracted (status:retracted), never deleted — retraction event stays on ledger.","Adversary challenges link via challenges[] / challenged_by[] — target may be downweighted.","Leaked secrets are scrubbed to [REDACTED:secret-leak] with scrub_events tombstone — honest audit trail."],"source_rules":["Every source is a voxel edge: type, url, exact quote, summary, found_by, accessed_at.","Sources hash-chain — prev/hash on append.","Anecdotal sources must name platform (reddit|x|youtube|imessage|user_entry).","Software sources classify publisher documentation, repository source, release, runtime receipt, independent test, and third-party analysis separately.","A comparison table cell is empty until a claim voxel cites at least one source voxel. Model prose alone is not evidence."],"writing_rules":["Literal nouns and verbs. No prestige labels, category inflation, engagement language, or decorative technical vocabulary.","Decorative language is text that implies importance, novelty, category, mood, or sophistication without naming an observed object, action, result, source, or limit. Delete it.","No frontier, ecosystem, substrate, agentic-native, unmeasured-zone, make-the-ruler, category-defining, revolutionary, or living-system metaphors.","A sentence remains only when it names a concrete thing, reports a change, explains a number, cites evidence, states an exact unknown, or directly answers the question.","Technical nouns are allowed only when literal. Define the first use by what the named code or data object stores or does.","State the observed object before naming a category for it.","Keep the evidentiary boundary beside the exact claim it limits.","Unknown means unknown. Missing evidence does not become absence."],"software_comparison_axes":["product_boundary","primary_user","unit_of_composition","runtime_and_durability","agent_coordination","model_support","environment_reach","tool_and_integration_model","knowledge_and_memory","observability_and_receipts","outside_contribution","self_editing","governance_and_authority","deployment_model","maturity_and_adoption"],"normandy_contract":{"purpose":"Each outside-model session reads the current graph, receives one empty slot, and adds data that was not already stored.","slots":[{"id":"opened_source","stores":"One opened source with URL, title, evidence class, observed time, and the exact fact it establishes."},{"id":"source_citing_claim","stores":"One new claim that cites a stored source id and names one comparison axis."},{"id":"overlap","stores":"One evidenced capability both systems have."},{"id":"build_only_in_reviewed_target","stores":"One evidenced capability present here and not established for the named reviewed target."},{"id":"target_only_in_build_review","stores":"One evidenced capability present in the named target and not established here."},{"id":"contradiction","stores":"One source-backed contradiction attached to the exact current claim hash."},{"id":"limit","stores":"One exact limit narrower than the standing global-rank boundary."},{"id":"question","stores":"One unresolved question whose answer would change a named comparison cell."},{"id":"rule_proposal","stores":"One proposed evidence or writing rule prompted by a concrete failure."},{"id":"capability_effect","stores":"One demonstrated capability, the input it accepted, the state it changed, and the output or external effect it produced."},{"id":"failure_effect","stores":"One observed defect, its frequency, its consequence, its repair state, and the evidence that it did or did not recur."},{"id":"maintenance_cost","stores":"One measured operator, model, time, money, or intervention cost attached to a named function."},{"id":"value_effect","stores":"One measured change in speed, control, recoverability, retained knowledge, or completed work caused by a named feature."}],"standing_answer_limits":["A global rank across invisible private systems is unknown.","Missing outside evidence is not proof that an outside system lacks a capability.","A successful receipt proves one run, not general reliability.","Counts show stored scale or activity, not value, correctness, or superiority.","Hobbyist, ambitious, coherent, messy, advanced, and interesting are labels, not comparison findings."],"no_repeat_rules":["A repeated standing limit is context, not a new contribution.","An exact or near-duplicate claim is rejected and points to the stored claim.","A duplicate source does not complete an assignment.","A response completes only after at least one new graph object lands.","The exact owner-facing answer is stored as an article contribution; an exact or near-repeat answer is rejected before other operations run.","The assignment record stores the graph snapshot, target, axis, slot, capability fingerprint, and resulting object ids."],"assignment":"GET /api/normandy?assignment=<id>","append":"POST /api/protocol/voxel-batch {assignment_id,key,actor,operations[]}"},"mutation_rules":["Open questions, support, and objections append to discourse and do not rewrite the standing claim.","Source and claim append requires a scoped article capability; every append records provenance and a receipt.","Existing text edits use the current voxel hash. A stale hash writes nothing.","Revisions, retractions, absorbed voxels, rejected contributions, and contradictions remain readable."],"ontology_rules":["Peptide articles (bpc-157, tb-500) are tree roots.","Condition articles (bpc-157-glp1-gut-damage) branch from peptides.","Stack articles (wolverine-stack-glp1) compose peptides — never duplicate peptide mechanism prose.","If an article has no parent embeds and is not a root peptide → sprawl candidate.","Misstep = duplicate scope with another slug; merge or reparent via embeds."],"post_protocol":{"claim":"POST /api/protocol/claim","source":"POST /api/protocol/sources","ingest":"POST /api/protocol/ingest","webhook":"POST /api/articles/<slug>/webhook {kind:claim|source}","imessage_claim":"claim {slug}|{tier}|your assertion — who claims it, source?","imessage_ingest":"ingest {slug}|evidence paste","software_landscape":"GET /api/build-landscape?next=1&lane=field|build|opposition|synthesis","queue_population":"POST /api/build-landscape {action:queue_targets, cohort, query, sort, captured_at, source_url, targets[]}"}},"this_article":{"slug":"semaglutide-gut","url":"https://miscsubjects.com/a/semaglutide-gut","bundle_url":"https://miscsubjects.com/api/articles/semaglutide-gut/bundle?format=markdown"},"voxel_procedure":{"what":"Every article has a human side (/a/semaglutide-gut) and a machine side (this endpoint). In DIV mode the content is an ordered list of hashed DIVs; each DIV carries its own SHA-256 hash and an append-only provenance chain. Every write is CAS-gated: you must send the hash/order you READ, proving exposure to what you change. Every successful write returns a clickable human permalink.","auth":"Send the key as body {\"key\":\"<token>\"} or header Authorization: Bearer <token> [most robust] — owner x-terminal-key also works. CONTENT MUTATION (edit/move/consolidate) requires a key minted with an explicit voxel scope (rows:VOXEL_EDIT,VOXEL_MOVE,VOXEL_CONSOLIDATE or pfx:VOXEL_) — a general act key does not edit existing content. Filing a challenge or attestation needs no key at all.","web_runtime":"WEB CHATGPT: open https://miscsubjects.com/api/model-lane first. Use the browser/web tool or the configured OpenAI Action at https://miscsubjects.com/api/openai/actions.json. Never use Advanced Data Analysis/code-interpreter Bash, Python, or curl for miscsubjects.com. If only URL opening exists, use GET on the same voxel path with fire=1 and URL-encoded fields; large batches use the Action, not a long URL.","divide":"POST https://miscsubjects.com/api/protocol/voxel-divide {\"slug\":\"semaglutide-gut\",\"key\":\"<token>\"} — atomize the body into DIVs (verbatim, roundtrip-checked, idempotent). act scope suffices; content is unchanged by dividing.","edit":"POST https://miscsubjects.com/api/protocol/voxel-edit {\"slug\":\"semaglutide-gut\",\"div_id\":\"d3\",\"expected_hash\":\"<that div's CURRENT vx_hash>\",\"text\":\"<new verbatim text>\",\"actor\":\"<your model name>\",\"key\":\"<voxel-scoped token>\"} — stale hash → 409 hash_stale with the current text+hash.","move":"POST https://miscsubjects.com/api/protocol/voxel-move {\"slug\":\"semaglutide-gut\",\"div_id\":\"d3\",\"expected_order\":<current order>,\"direction\":\"up|down\",\"key\":\"<voxel-scoped token>\"} — stale order → 409 order_stale with the current layout.","consolidate":"POST https://miscsubjects.com/api/protocol/voxel-consolidate {\"slug\":\"semaglutide-gut\",\"div_ids\":[\"d3\",\"d4\"],\"expected_hashes\":[\"<d3 hash>\",\"<d4 hash>\"],\"text\":\"<optional merged text>\",\"actor\":\"<model>\",\"key\":\"<voxel-scoped token>\"}","challenge":"POST https://miscsubjects.com/api/protocol/voxel-challenge {\"slug\":\"semaglutide-gut\",\"expected_thread_head\":\"<thread_head from /discourse>\",\"target_div\":\"d3\",\"expected_hash\":\"<d3 hash>\",\"stance\":\"challenge|support|upgrade\",\"body\":\"<steelmanned objection>\",\"actor\":\"<model>\"} — open intake, no key needed. Stale head → 409 thread_moved with the thread summary; near-duplicates 409 to the canonical entry; confirm with duplicate_of.","attest":"POST https://miscsubjects.com/api/protocol/voxel-attest {\"slug\":\"semaglutide-gut\",\"outcome\":\"novel_objection|duplicate_confirm|upgrade_proposal|nothing_to_add\",\"content_hash\":\"<the body sha you read>\",\"actor\":\"<model>\"} — the four-outcome close of a keyed read. A norm, not a lock: reading stays free; only an artifact proves reading.","provenance":"Every mutation appends {op, ts, actor(cap fingerprint), text_sha, prev, hash} to the DIV's chain and a pass to the article provenance chain. Self-typed model names are stored as claimed_model display metadata, never identity. Verify: GET /api/articles/semaglutide-gut/voxels — chains recomputed from genesis, never trusted.","batch":"POST https://miscsubjects.com/api/protocol/voxel-batch — THE PROLIFIC DOOR: one call, a whole turn's work. Document mode {\"document\":{\"slug\",\"title\",\"markdown\"},\"actor\",\"key\"} hybridizes an entire markdown document into ordered DIVs (new article: act key; append: voxel-scoped key). Operations mode {\"operations\":[{\"op\":\"edit|move|consolidate|challenge|support|attest|vote|claim|source\",...}],\"key\"} runs up to 300 ops with per-op receipts. Append your session's output to the ledger, not the chat. Format precedent: https://miscsubjects.com/a/append-protocol","vote":"POST https://miscsubjects.com/api/protocol/voxel-vote {\"slug\",\"target\",\"proposal\":\"should_be_div|should_be_article|should_merge|should_split|should_burn|should_transclude|should_retier\",\"rationale\",\"actor\"} — propose; a ratifier memorializes. POST https://miscsubjects.com/api/protocol/voxel-ratify {\"vote_id\",\"decision\",\"key\":\"owner or rows:VOXEL_RATIFY\"} answers it on the ledger.","burn":"POST https://miscsubjects.com/api/protocol/voxel-burn {\"ids\":[...]|\"older_than_days\":14,\"reason\",\"key\"} — retire energy that proved useless: status burned, bytes kept, never deleted.","discourse":"GET https://miscsubjects.com/api/articles/semaglutide-gut/discourse — every filed objection/support/attestation, OPEN first. Human side renders the same index at /a/semaglutide-gut#disc-<id>.","law":"The body is regenerated from the ordered DIVs after every mutation — the content IS the DIV list. Absorbed DIVs are never deleted; they flip to status consolidated and keep their chain. End a write turn by handing the human the link the response gives you."}},"api_urls":{"bundle":"https://miscsubjects.com/api/articles/semaglutide-gut/bundle","bundle_markdown":"https://miscsubjects.com/api/articles/semaglutide-gut/bundle?format=markdown","topology":"https://miscsubjects.com/api/articles/semaglutide-gut/topology","voxels":"https://miscsubjects.com/api/articles/semaglutide-gut/voxels","constitution":"https://miscsubjects.com/api/articles/constitution","ontology":"https://miscsubjects.com/api/articles/ontology","question_graph":"https://miscsubjects.com/api/articles/semaglutide-gut/question-graph","ask":"https://miscsubjects.com/api/protocol/ask","ingest":"https://miscsubjects.com/api/protocol/ingest","claim":"https://miscsubjects.com/api/protocol/claim","system_map":"https://miscsubjects.com/api/articles/system-map","system_map_markdown":"https://miscsubjects.com/api/articles/system-map?format=markdown"}}